More logging for command injection classifier model training (#7779)

crates/goose/src/security/mod.rs

@@ -165,13 +165,18 @@ impl SecurityManager {
                             tool_request_id: tool_request.id.clone(),
                         });
                     }
-                } else {
+                } else if analysis_result.scanned {
+                    let tool_call_json =
+                        serde_json::to_string(&tool_call).unwrap_or_else(|_| "{}".to_string());
+
                     tracing::info!(
+                        monotonic_counter.goose.prompt_injection_tool_call_passed = 1,
                         tool_name = %tool_call.name,
                         tool_request_id = %tool_request.id,
+                        tool_call_json = %tool_call_json,
                         confidence = analysis_result.confidence,
                         explanation = %sanitized_explanation,
-                        "✅ Current tool call passed security analysis"
+                        "Current tool call passed security analysis"
                     );
                 }
             }

crates/goose/src/security/scanner.rs

@@ -21,6 +21,7 @@ pub struct ScanResult {
     pub is_malicious: bool,
     pub confidence: f32,
     pub explanation: String,
+    pub scanned: bool,
 }
 
 struct DetailedScanResult {
@@ -127,6 +128,7 @@ impl PromptInjectionScanner {
                 is_malicious: false,
                 confidence: 0.0,
                 explanation: "Tool call skipped: only shell commands are scanned".to_string(),
+                scanned: false,
             });
         }
 
@@ -180,6 +182,7 @@ impl PromptInjectionScanner {
             is_malicious: final_confidence >= threshold,
             confidence: final_confidence,
             explanation: self.build_explanation(&final_result, threshold, &tool_content),
+            scanned: true,
         })
     }